Fatty Acid Hydroxylase-Associated Neurodegeneration-A Rare Case of Neurodegeneration with Brain Iron Accumulation NBIA
Vibha Jain1, Sunita Bijarnia-Mahay1, Ramprasad VL2, Renu Saxena1, Verma IC1 1Institute of Medical Genetics & Genomics, Sir Ganga Ram Hospital, New Delhi 2Medgenome Labs Private Limited, Bengaluru Correspondence to: Dr Sunita Bijarnia-MahayEmail:bijarnia@gmail.com
1 Abstract
Fatty acid hydroxylase associated neurodegeneration is a rare disorder which belongs to the group of disorders of
neurodegeneration with brain iron accumulation (NBIA). We present a case of a 9-year-old girl who presented with
gradually progressive stiffness of limbs with speech delay and neuroimaging findings of T2 hypointensities in the globus
pallidus and substantia nigra suggestive of brain iron accumulation. Targeted exome sequencing by next generation
sequencing (NGS) revealed a novel homozygous splice site likely pathogenic variant in intron 6 of the FA2H at position
c.1039+2T>G, confirming the diagnosis of Fatty acid hydroxylase-associated neurodegeneration (FAHN), a subtype of
NBIA. FAHN has never been reported from the Indian subcontinent before. This report further emphasizes
the use of good clinical evaluation and NGS in diagnosing rare disorders which otherwise are difficult to
recognise.
2 Introduction
Iron is vital to life but it may generate neurotoxic reactive oxygen species if inappropriately handled. Neurodegeneration
with brain iron accumulation (NBIA) is a group of inherited neurologic disorders in which iron accumulates in the basal
ganglia (most often in the globus pallidus and/or substantia nigra) resulting in variable degree of progressive dystonia,
spasticity, parkinsonism, neuropsychiatric abnormalities, with or without optic atrophy or retinal degeneration [Gregory et
al., 2018]. This disorder has 10 subtypes based on involvement of different genes. It is a slowly progressive disorder with
marked genetic and clinical heterogeneity. We present a patient with progressive motor regression with
spasticity and mild optic atrophy due to novel biallelic variant in the FA2H gene (Fatty acid hydroxylase
associated Neurodegeneration, FAHN), affecting GT donor splice site in intron 6. The role of thorough clinical
examination, high level of suspicion and the use of next generation sequencing (NGS) is emphasized in this
report.
3 Case report
The proband was a 9-year-old girl, the second child of non-consanguineous parents from Bangladesh, born by
Caesarean section at term gestation, with a birth weight of 2.8 kg. She required no special care at birth or in
the perinatal period. She achieved developmental milestones appropriately till 2 years of age, after which
the parents noted some difficulties in mobility. Initially she used to run on toes but then her condition
worsened and the difficulty became evident in walking as well. She was able to walk independently till 4
years of age, which at the time of examination regressed to walking a few steps with great difficulty, using
support.
There was speech delay, although she started speaking monosyllables at 2 years, no further progress in speech was
noted and at 9 years, she had unclear speech with only few words in her vocabulary. Hearing evaluation showed normal
result. There was no history of any seizure or acute illness associated with lethargy or coma at any time. No history of
visual impairment or abnormal movement of eyes (nystagmus) was given. Her intellect appeared normal, although it was
not formally assessed.
On examination, she was alert and cooperative and her anthropometric measurements were corresponding to 25th
centile for the age (as per WHO standards). On general examination, no dysmorphic features were present. The
respiratory and cardiovascular system and abdominal examination was normal. On central nervous system (CNS)
examination, generalised spasticity was noted involving distal joints of lower limbs more than upper limbs. Power was
normal, and deep tendon reflexes were brisk in both the upper and lower limbs. On eye evaluation, mild optic atrophy was
noted. There was no nystagmus or KF ring.
Parents had sought medical consultation 6-months prior at which time she had been evaluated. Plasma lactate and
ammonia were 23 mg/dl (ref. 4.5–20 mg/dl) and 54 µmol/L (ref 9–35 µmol/L) respectively. Thyroid profile, renal function
tests and liver function tests were normal. Metabolic investigations including Tandem Mass Spectrometry (TMS) and
urine Gas Chromatography Mass Spectrometry (GC-MS) showed no specific etiology. Eye evaluation showed mild disc
pallor suggestive of optic atrophy. Visual evoked potential test revealed mild delay in amplitude and latency in
both the eyes further confirming the diagnosis of optic atrophy. Brain MRI showed mild prominence of
cerebellar foliae, ponto-cerebellar hypoplasia and white matter hyperintensities on bilateral parieto-occipital
regions. Globus pallidus and substantia nigra hypointensities were appreciated in T2 weighted images (Figure
1).
Figure 1: MRI of the brain (T2 images) showing hypointensity in bilateral globus pallidus (Fig 1A), white
matter hyperintensities (Fig 1A & 1B), thin corpus callosum and cerebellar hypoplasia (Fig 1C). Figures A & B
axial view, figure C) sagittal view.
Based on clinical profile of an early-onset neurodegenerative disorder and characteristic MRI findings, the possibility of
neurodegeneration with brain iron accumulation (NBIA) was considered. To confirm the diagnosis, next generation
sequencing (NGS)-based targeted clinical exome analysis was performed. The patient was detected to have a
novel homozygous splice donor site likely-pathogenic variant at position c.1039+2T>G in the FA2H gene
(NM_024306.4) confirming the diagnosis of Fatty acid hydroxylase-associated neurodegeneration (FAHN).
Another phenotype associated with FA2H is Spastic paraplegia type 35. However, this phenotype is now
considered as a part of the spectrum of FAHN. The family was counselled regarding the genetic basis of the
disorder, lack of specific treatment, risk of recurrence in their future pregnancies and availability of prenatal
diagnosis.
The variant, c.1039+2T>G affects GT donor splice site of exon 6 of the FA2H gene (NM_024306.4). It has not been
reported in both the 1000 genomes and ExAC databases. The in silico prediction of the variant was damaging or
deleterious by various online predictive tools. The reference region was conserved across species. Analysis of
this variant with the help of “Human splicing finder” revealed broken GT donor splice site due to this
change.
4 Discussion
The FA2H gene codes for the enzyme, fatty acid 2-hydroxylase enzyme which catalyses hydroxylation at position 2 of
N-acyl chain of ceramide moiety which is an important component of the myelin sheath (Gregory et al,2018; Schneider et
al., 2013). Pathogenic variants in this gene have been found to be associated with demyelinating leukodystrophy (HSP35)
and the NBIA - FAHN. The exact cause of disturbed iron metabolism and abnormal accumulation in the basal ganglia in
FAHN is still not clear. A reasonable hypothesis developed is that the pallidum being a high metabolic demand
structure, is vulnerable to subacute oxidative stress from mitochondrial dysfunction caused by intrinsic
or extrinsic factors [Hayflick et al; 2014], and that the iron accumulation is triggered by the apoptotic
cascade or cellular damage [Kruer et al., 2017]. The iron discarded from demyelination is not able to be
re-used and hence gets accumulated in these structures because of specific predilection (Schneider et al.,
2013).
Fatty acid hydroxylase-associated neurodegeneration (FAHN) is a subtype of NBIA (Gregory et al., 2018). It is a rare,
autosomal recessive disorder, and till date a total of just over 50 individuals of diverse ethnicity with FAHN have been
described (Kruer et al., 2017; Mari et al., 2018). The disorder can be recognised by the characteristic features of
childhood-onset progressive spastic paraplegia that progresses to tetraparesis, or focal dystonia, ataxia, dysarthria,
intellectual decline, and optic atrophy, accompanied by iron deposition in the brain. MRI studies demonstrate bilateral
globus pallidus T2 hypointensity, consistent with iron deposition, prominent pontocerebellar atrophy, mild cortical
atrophy, white matter lesions and corpus callosum thinning with variability among patients. Spastic paraplegia 35 is now
considered as a part of the same disorder. Disease progression in FAHN is intermittent and there may be a period of
clinical stability. Although premature death often occurs in the third or fourth decade secondary to a combination of
nutrition-related immunodeficiency and respiratory compromise, life span is variable and genotype-phenotype correlation
is difficult to make.
NBIA is an important group of neurodegenerative disorders to be identified in childhood, because of the recognisable
clinical and radiological features. The common features in the group include a history of regression of milestones after a
variable period of normal development, spasticity or extrapyramidal symptoms, and a variable neuroradiological picture.
Differential diagnosis in this clinical setting include white matter disorders such as Metachromatic leukodystrophy,
Krabbe disease, Pelizaeus- Merzbacher disease, Adrenoleukodystrophy, Juvenile Huntington disease, Friedreich’s ataxia
and Hereditary Spastic Paraplegias.
MRI of the brain typically shows hypo-intensities in the globus pallidus, substantia nigra and other basal ganglia
structures. Cerebellar atrophy and visual impairment secondary to optic atrophy is not present in Pantothenate
kinase-associated neurodegeneration (PKAN). The typical MRI features are: ‘eye of the tiger’ sign in PKAN; cerebellar
atrophy in PLA2G6-associated neurodegeneration (PLAN) and Aceruloplasminemia; T2 -weighted signal
hyperintensity with a central band of hypointensity in the substantia nigra in Beta-propeller Protein-Associated
Neurodegeneration (BPAN); and cerebral, cerebellar and brain stem atrophy in Kufor-Rakeb syndrome (Gregory
et al., 2018). Differential diagnosis for basal ganglia hypointensities include multiple sclerosis, Juvenile
Huntington disease and Fahr disease. The age of onset of these disorders is however much later than for
NBIAs.
The diagnostic yield of single gene disorders, including NBIA has increased greatly over the years owing to
NGS technology. We previously described one case of PLA2G6 -related neuronal degeneration using this
technology (Goyal et al., 2015). Another study reported mutations in 15 families with PLAN using Sanger
sequencing method from India (Kapoor et al., 2016). Whole genome sequencing technology offers even
better diagnostic yield as it covers not only the coding regions but the entire genome including any copy
number variation. Our case of FAHN adds to the spectrum of NBIA disorders that are seen in the Indian style="width:500px;
subcontinent.
Figure 2: The distribution of cases of NBIA types seen over last 15 years at Institute of Genetics and Genomics
Sir Ganga Ram Hospital New Delhi
In our own experience from the genetic clinic at Sir Ganga Ram Hospital of the last 15 years or so (Figure 2), from
approximately 45 cases diagnosed with NBIA using clinical, neuroradiological and molecular methods, PKAN remains the
most frequent followed by PLAN, with FAHN now adding a new type. Our findings are in agreement with those of others
from various parts of the world. Our case emphasizes the importance of thorough clinical examination and the use
of advanced molecular techniques like next generation sequencing in the accurate diagnosis of these rare
disorders.
Acknowledgement: We are very grateful to our laboratory especially Dr Sudha Kohli and others for the help rendered,
Dr Sakthivel Murugan at Medgenome labs Pvt. Ltd. for molecular analysis, Dr Ratna D Puri – Chairperson, IMGG, for
guidance, and the patient and family for the support.
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